Microsatellite/SSR markers [Fragment Analysis] (Per Reaction)
- Dispense the aliquot to each PCR well and then add 0.5 µL of respective primers
- Give a short spin
- Cover the plate with 8 tube strips
- Place in the PCR with the fallowing reaction program
- 95° C for 12 min
- 10 cycles of
- 94° C for 15 sec
- 55° C for 15 sec
- 72° C for 30 sec
- 20 cycles of
- 89° C for 15 sec
- 55° C for 15 sec
- 72° C for 30 sec
- Final extension of 72° C for 10 min
- Hold at 4° C forever
- For multiplexing we can pool the PCR products in the ratio of 1:1:2 (FAM:VIC:NED)
- Make the master mix of
- HiDi-Formamide: 9 µL
- GS 500 LIZ: 0.5 µL
- Total: 9.5 µL
- Add the 9.5 µL HiDi-LIZ mix to each PCR well and add 1.0 µL (or 2 µL) of pooled PCR product
- Short spin, denature (95° C for 5 min) and snap chill (4° C for 5 min)
- Make plate record for fragment analysis and start the run (with G5 Dye set in 3500)
- Analyze the data using Genemapper software